I want to run third part tool written in python on my ubuntu machine (corgy tool).

However I don't know how to add additional modules to Python path.

cat doc/download.rst
There is currently no setup.py, so you need to manually add
the download directory to your PYTHON_PATH environment variable.

How can I add directory to PYTHON_PATH?

I have tried:
export PYTHON_PATH=/home/user/directory:$PYTHON_PATH && source .bashrc
export PATH=/home/user/directory:$PATH && source .bashrc

python
import sys
sys.path.append("/home/user/directory/")

But when I try to run this tool I get:

Traceback (most recent call last):
File "examples/dotbracket_to_bulge_graph.py", line 4, in <module>
import corgy.graph.bulge_graph as cgb
ImportError: No module named corgy.graph.bulge_graph

2 Answers

Create a .bash_profile in your home directory. Then, add the line

PYTHONPATH=$PYTHONPATH:new_dir
EXPORT $PYTHONPATH

Or even better:

if [ -d "new_dir" ] ; then PYTHONPATH="$PYTHONPATH:new_dir"
fi
EXPORT $PYTHONPATH

The .bash_profile properties are loaded every time you log in.

The source command is useful if you don't want to log in again.

5

@fedorqui's answer above was almost good for me, but there is at least one mistake (I am not sure about the export statement in all caps, I am a complete newbie). There should not be a $ sign preceding PYTHONPATH in the export statement. So the options would be:

Create a .bash_profile in your home directory. Then, add the line

PYTHONPATH=$PYTHONPATH:new_dir
export PYTHONPATH

Or even better:

if [ -d "new_dir" ] ; then PYTHONPATH="$PYTHONPATH:new_dir"
fi
export PYTHONPATH

Your Answer

Sign up or log in

Sign up using Google Sign up using Facebook Sign up using Email and Password Submit

Post as a guest

Post Your Answer Discard

By clicking “Post Your Answer”, you agree to our terms of service, privacy policy and cookie policy