Polars apply performance for custom functions
Andrew Henderson
I've enjoyed with Polars significant speed-ups over Pandas, except one case. I'm newbie to Polars, so it could be just my wrong usage. Anyway here is the toy-example:
on single column I need to apply custom function in my case it is parse from probablypeople library () but problem is generic.
Plain pandas apply has similar runtime like Polars, but pandas with parallel_apply from () gets speed-up proportional to number of cores.
It looks for me that Polars uses only single core for custom functions,or I miss something?
If I use Polars correctly, maybe there is a possibility to create tool like pandaralell for Polars?
!pip install probablepeople
!pip install pandarallel
import pandas as pd
import probablepeople as pp
import polars as pl
from pandarallel import pandarallel
AMOUNT = 1000_000
#Pandas:
df = pd.DataFrame({'a': ["Mr. Joe Smith"]})
df = df.loc[df.index.repeat(AMOUNT)].reset_index(drop=True)
df['b'] = df['a'].apply(pp.parse)
#Pandarallel:
pandarallel.initialize(progress_bar=True)
df['b_multi'] = df['a'].parallel_apply(pp.parse)
#Polars:
dfp = pl.DataFrame({'a': ["Mr. Joe Smith"]})
dfp = dfp.select(pl.all().repeat_by(AMOUNT).explode())
dfp = dfp.with_columns(pl.col('a').apply(pp.parse).alias('b')) 1 Answer
pandarallel uses multiprocessing.
You could also use multiprocessing with polars.
We're using multiprocessing.pool.Pool.imap with the default settings as an example.
import multiprocessing
import polars as pl
import probablepeople as pp
from pip._vendor.rich.progress import track
def parallel_apply(function, column): with multiprocessing.get_context("spawn").Pool() as pool: return pl.Series(pool.imap(function, track(column)))
if __name__ == "__main__": df = pl.DataFrame({ "name": ["Mr. Joe Smith", "Mrs. I & II Alice Random"] }) df = df.with_columns(pp = pl.col("name").map_batches(lambda col: parallel_apply(pp.parse, col)) ) print(df).map_batches()is used to pass the full column to a function.The column is passed to
parallel_applyalong with the Python function to be executed in the Pool e.g.pp.parserich.progress.track()(which also comes bundled withpip) is used for a progress bar.
Working... ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 0:00:00
shape: (2, 2)
┌──────────────────────────┬───────────────────────────────────┐
│ name ┆ pp │
│ --- ┆ --- │
│ str ┆ list[list[str]] │
╞══════════════════════════╪═══════════════════════════════════╡
│ Mr. Joe Smith ┆ [["Mr.", "PrefixMarital"], ["Joe… │
│ Mrs. I & II Alice Random ┆ [["Mrs.", "PrefixMarital"], ["I"… │
└──────────────────────────┴───────────────────────────────────┘Performance
Just as a basic comparison, creating a 1_000_000 row dataframe - I get the following runtimes:
| multiprocessing | duration |
|---|---|
| yes | 1m23s |
| no | 5m2s |